| Rank | Team | Home Runs Allowed | Record |
| 1. | Minnesota Twins, 1996 | 280 | 76-86 |
| 2. | Texas Rangers, 2003 | 277 | 57-105 |
| 3. | Kansas City Royals, 2002 | 265 | 73-89 |
| 4. | Texas Rangers, 2004 | 264 | 74-88 |
| 5. | Baltimore Orioles, 2000 | 261 | 66-96 |
| 6. | Toronto Blue Jays, 2004 | 258 | 60-102 |
| 7. | Colorado Rockies, 2004 | 253 | 63-99 |
| 8. | Detroit Tigers, 1996 | 252 | 65-97 |
| 9. | Baltimore Orioles, 2002 | 252 | 57-105 |
| 10. | Chicago White Sox, 2004 | 252 | 75-87 |
| 11. | Colorado Rockies, 2001 | 250 | 73-89 |
| 12. | Baltimore Orioles, 1987 | 248 | 59-103 |
| 13. | Detroit Tigers, 1999 | 248 | 75-87 |
| 14. | Detroit Tigers, 2003 | 248 | 53-109 |
| 15. | Colorado Rockies, 1999 | 247 | 58-104 |
| 16. | Brooklyn Dodgers, 1957 | 244 | 68-86 |
| 17. | Texas Rangers, 2000 | 243 | 61-101 |
| 18. | Chicago White Sox, 2003 | 242 | 88-74 |
| 19. | Kansas City Royals, 2000 | 241 | 56-106 |
| 20. | Milwaukee Brewers, 2009 | 240 | 47-115 |
| 21. | Colorado Rockies, 1998 | 238 | 60-102 |
| 22. | Milwaukee Brewers, 2001 | 238 | 79-83 |
| 23. | Baltimore Orioles, 2005 | 238 | 57-105 |
| 24. | Colorado Rockies, 2000 | 236 | 85-77 |
| 25. | Detroit Tigers, 2004 | 236 | 67-95 |
| 26. | Chicago White Sox, 2007 | 236 | 69-93 |
| 27. | Colorado Rockies, 1996 | 235 | 75-87 |
| 28. | Kansas City Royals, 2001 | 234 | 79-83 |
| 29. | Detroit Tigers, 1994 | 233 | 73-89 |
| 30. | Texas Rangers, 1997 | 233 | 80-82 |
| 31. | Texas Rangers, 2002 | 233 | 66-96 |
| 32. | Oakland A's, 1997 | 232 | 62-100 |
| 33. | Kansas City Royals, 2003 | 232 | 81-81 |
| 34. | Baltimore Orioles, 2009 | 232 | 94-68 |
| 35. | Oakland A's, 2002 | 231 | 84-78 |
| 36. | Pittsburgh Pirates, 2000 | 230 | 74-88 |
| 37. | St. Louis Cardinals, 2000 | 229 | 61-101 |
| 38. | Texas Rangers, 2001 | 228 | 64-98 |
| 39. | Detroit Tigers, 2005 | 228 | 70-92 |
| 40. | Minnesota Twins, 1999 | 226 | 78-84 |
| 41. | Texas Rangers, 2008 | 225 | 55-107 |
| 42. | Detroit Tigers, 1998 | 224 | 84-78 |
| 43. | New York Mets, 1962 | 223 | 67-95 |
| 44. | Milwaukee Brewers, 2003 | 223 | 69-93 |
| 45. | Baltimore Orioles, 2006 | 223 | 65-97 |
| 46. | Los Angeles Dodgers, 1958 | 222 | 81-73 |
| 47. | Oakland A's, 1996 | 222 | 77-85 |
| 48. | Los Angeles Dodgers, 1960 | 221 | 76-78 |
| 49. | Texas Rangers, 1999 | 221 | 87-75 |
| 50. | Baltimore Orioles, 2003 | 221 | 88-74 |